Introduction
How to install
Part 1: gempipe recon
Part 2: manual curation
Part 3: gempipe derive
Part 4: multi-strain analysis
gempipe autopilot
How to cite
API
gempipe.interface
Tutorial:
sanity check
Tutorial:
gap-filling
Tutorial:
strain clustering
gempipe
Overview: module code
All modules for which code is available
gempipe.interface.clusters
gempipe.interface.gaps
gempipe.interface.medium
gempipe.interface.sanity